资源导航

1. seqmonk: A tool to visualise and analyse high throughput mapped sequence data SeqMonk is a program to enable the visualisation and analysis of mapped sequence data; 标签：Genomics, Epigenomics
2. SICER: A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.; 标签：ChIP-Seq, Epigenomics
3. Kismeth: Web-based tool for bisulfite sequencing analysis; 标签：DNA methylation, Epigenomics
4. GimmeMotifs: GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and clusters these motifs using the WIC similarity scoring metric.; 标签：Transcription regulation,ChIP-Seq, Epigenomics
5. MethylCoder: Pipeline for fast, simple processing of BiSulfite-treated reads into methylation data. Includes scripts for analysis and visualization. In addition to a binary output, the direct output of methylcoder is a text file that indicates per-nucleotide methylation context (CG/CHG/CHH) and meth...; 标签：Genomics, Sequencing, DNA methylation, Epigenomics
6. GPS: GPS is a high spatial resolution peak detection algorithm for ChIP-Seq data.; 标签：Genomics, ChIP-Seq,Transcription Factor Binding Site identification,Regulatory genomics epigenomics
7. HINT: HMM-based Identification of TF Footprints; 标签：Regulatory genomics,Regulatory genomics epigenomics, Transcription Factor Binding Site identification

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